Glycosylator

This is the API documentation of the Glycosylator package.

• The core package
  • The Glycan
    • Making Glycans from IUPAC strings
    • Making Glycans from other inputs
    • Modifying individual sugars
    • Glycan
      • Glycan.attach()
      • Glycan.clashes_with_scaffold()
      • Glycan.crop_to()
      • Glycan.draw2d()
      • Glycan.extend_to()
      • Glycan.find_glycosmos_ids()
      • Glycan.find_glytoucan_ids()
      • Glycan.from_compound()
      • Glycan.from_glycosmos()
      • Glycan.from_glytoucan()
      • Glycan.from_iupac()
      • Glycan.from_pdb()
      • Glycan.from_snfg()
      • Glycan.get_glycosmos_id()
      • Glycan.get_glytoucan_id()
      • Glycan.hist()
      • Glycan.infer_glycan_tree()
      • Glycan.remove_residues()
      • Glycan.search_glycosmos_ids()
      • Glycan.search_glytoucan_ids()
      • Glycan.snfg()
      • Glycan.to_iupac()
      • Glycan.to_snfg()
    • glycan()
    • read_graph()
    • read_iupac()
    • read_snfg()
    • write_iupac()
    • write_snfg()
  • The Scaffold
• The optimizers package
  • The utils module
    • make_scaffold_graph()
  • Module contents
• The resources package
  • The sequons module
    • SEQUONS
    • Sequon
      • Sequon.add_linkage()
      • Sequon.get_linkage()
      • Sequon.to_dict()
    • add_sequon()
    • available_sequons()
    • get_default_sequons()
    • get_sequon()
    • load_sequons()
    • restore_sequons()
    • save_sequons()
    • set_default_sequons()
  • The icons module
    • get_base_color()
    • get_icon()
    • get_icon_path()
  • The names module
    • id_to_name()
    • is_beta()
• The utils package
  • The iupac module
    • IUPACParser
      • IUPACParser.parse()
      • IUPACParser.reset()
    • IUPACStringMaker
      • IUPACStringMaker.beta_alpha_mismatch_pattern
      • IUPACStringMaker.beta_alpha_mismatch_replacement
      • IUPACStringMaker.double_beta_pattern
      • IUPACStringMaker.double_beta_replacement
      • IUPACStringMaker.terminal_alpha_pattern
      • IUPACStringMaker.terminal_alpha_replacement
      • IUPACStringMaker.terminal_beta_pattern
      • IUPACStringMaker.terminal_beta_replacement
      • IUPACStringMaker.write_string()
    • make_iupac_string()
    • make_link_id()
    • make_snfg_string()
    • parse_iupac()
    • parse_snfg()
  • The visual module
    • Canvas
      • Canvas.root_nodes
      • Canvas.all_nodes
      • Canvas.add()
      • Canvas.flip()
      • Canvas.from_dict()
      • Canvas.from_glycan()
      • Canvas.get_clashing_nodes()
      • Canvas.get_xlim()
      • Canvas.get_ylim()
      • Canvas.has_node()
      • Canvas.icicle_layout()
      • Canvas.is_free()
      • Canvas.leaves
      • Canvas.remove()
      • Canvas.render()
      • Canvas.rotate90()
      • Canvas.scale()
      • Canvas.tree_layout()
      • Canvas.xlim
      • Canvas.ylim
    • GlycanViewer2D
      • GlycanViewer2D.disable_glycowork()
      • GlycanViewer2D.enable_glycowork()
    • Node
      • Node.id
      • Node.icon
      • Node.children
      • Node.parent
      • Node.canvas
      • Node.x
      • Node.y
      • Node.add_child()
      • Node.depth
      • Node.get_ancestors()
      • Node.get_descendants()
      • Node.get_left_cousins()
      • Node.get_left_siblings()
      • Node.get_right_cousins()
      • Node.get_right_siblings()
      • Node.has_descendant()
      • Node.has_valid_placement()
      • Node.move_to()
      • Node.place()
      • Node.remove_child()
      • Node.shift_down()
      • Node.shift_up()
      • Node.siblings
    • ScaffoldViewer2D
      • ScaffoldViewer2D.draw_glycans()
      • ScaffoldViewer2D.draw_glycosylation_sites()
      • ScaffoldViewer2D.get_figure()
      • ScaffoldViewer2D.save()
      • ScaffoldViewer2D.show()
      • ScaffoldViewer2D.title()
    • USE_GLYCOWORK
    • dont_use_glycowork()
    • edge_label_defaults
    • use_glycowork()